1IZO Oxidoreductase date Oct 10, 2002
title Cytochrome P450 Bs Beta Complexed With Fatty Acid
authors D.S.Lee, A.Yamada, H.Sugimoto, I.Matsunaga, H.Ogura, K.Ichihara, S S.Y.Park, Y.Shiro, Riken Structural Genomicsproteomics Initi (Rsgi)
compound source
Molecule: Cytochrome P450 152a1
Chain: A, B, C
Synonym: P450bsbeta
Ec: 1.14.-.-
Engineered: Yes
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe-30
symmetry Space Group: P 32 2 1
R_factor 0.246 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
155.789 155.789 111.904 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand HEM, PAM enzyme Oxidoreductase E.C.1.14 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceSubstrate recognition and molecular mechanism of fatty acid hydroxylation by cytochrome P450 from Bacillus subtilis. Crystallographic, spectroscopic, and mutational studies., Lee DS, Yamada A, Sugimoto H, Matsunaga I, Ogura H, Ichihara K, Adachi S, Park SY, Shiro Y, J Biol Chem 2003 Mar 14;278(11):9761-7. PMID:12519760
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (215 Kb) [Save to disk]
  • Biological Unit Coordinates (1izo.pdb1.gz) 73 Kb
  • Biological Unit Coordinates (1izo.pdb2.gz) 72 Kb
  • Biological Unit Coordinates (1izo.pdb3.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 1IZO
  • CSU: Contacts of Structural Units for 1IZO
  • Likely Quarternary Molecular Structure file(s) for 1IZO
  • Structure Factors (754 Kb)
  • Retrieve 1IZO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IZO from S2C, [Save to disk]
  • Re-refined 1izo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1IZO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1IZO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1IZO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1izoa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1izob_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1izoc_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1izo_B] [1izo] [1izo_C] [1izo_A]
  • SWISS-PROT database: [O31440]
  • Domain organization of [CYPC_BACSU] by SWISSPFAM
  • Other resources with information on 1IZO
  • Community annotation for 1IZO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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