1J10	Hydrolase	date	Nov 25, 2002
title	Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex W
authors	T.Oyama, H.Miyake, M.Kusunoki, Y.Nitta
compound		source
Molecule: Beta-Amylase Chain: A, B, C, D Synonym: 1,4-Alpha-D-Glucan Maltohydrolase Ec: 3.2.1.2		Organism_scientific: Bacillus Cereus Organism_taxid: 1396 Strain: Var. Mycoides
symmetry	Space Group: C 1 2 1	R_factor 0.189 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 177.900 112.900 146.200 90.00 105.80 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	CA, GLC, XYP, XYS	enzyme	Hydrolase E.C.3.2.1.2 BRENDA
related structures	by homologous chain: 1J0Y, 1J12
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Crystal structures of beta-amylase from Bacillus cereus var mycoides in complexes with substrate analogs and affinity-labeling reagents., Oyama T, Miyake H, Kusunoki M, Nitta Y, J Biochem (Tokyo) 2003 Apr;133(4):467-74. PMID:12761294

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (348 Kb) [Save to disk] Biological Unit Coordinates (1j10.pdb1.gz) 90 Kb Biological Unit Coordinates (1j10.pdb2.gz) 88 Kb Biological Unit Coordinates (1j10.pdb3.gz) 89 Kb Biological Unit Coordinates (1j10.pdb4.gz) 90 Kb LPC: Ligand-Protein Contacts for 1J10 CSU: Contacts of Structural Units for 1J10 Likely Quarternary Molecular Structure file(s) for 1J10 Structure Factors (1383 Kb) Retrieve 1J10 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1J10 from S2C, [Save to disk] Re-refined 1j10 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1J10 in 3D

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Visual 3D analysis of 1J10

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1J10, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1j10a2, region A:1-417 [Jmol] [rasmolscript] [script source]     - Domain d1j10a1, region A:418-516 [Jmol] [rasmolscript] [script source]     - Domain d1j10b2, region B:1-417 [Jmol] [rasmolscript] [script source]     - Domain d1j10b1, region B:418-516 [Jmol] [rasmolscript] [script source]     - Domain d1j10c2, region C:1-417 [Jmol] [rasmolscript] [script source]     - Domain d1j10c1, region C:418-516 [Jmol] [rasmolscript] [script source]     - Domain d1j10d2, region D:1-417 [Jmol] [rasmolscript] [script source]     - Domain d1j10d1, region D:418-516 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1j10_D] [1j10_C] [1j10_A] [1j10_B] [1j10] SWISS-PROT database: [P36924] Domain organization of [AMYB_BACCE] by SWISSPFAM Domain found in 1J10: [CBM_2 ] by SMART

Other resources with information on 1J10

Community annotation for 1J10 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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