1J2L	Toxin	date	Jan 06, 2003
title	Crystal Structure Of The Disintegrin, Trimestatin
authors	Y.Fujii, D.Okuda, Z.Fujimoto, T.Morita, H.Mizuno
compound		source
Molecule: Disintegrin Triflavin Chain: A Synonym: Trimestatin, Rgd-Containing Peptide		Organism_scientific: Trimeresurus Flavoviridis Organism_taxid: 88087 Secretion: Venom
symmetry	Space Group: C 1 2 1	R_factor 0.187 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.546 48.119 37.667 90.00 126.80 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	SO4	enzyme
note	1J2L is a representative structure
related structures	by homologous chain: 1FVL
Gene Ontology	Chain Function Process Component A toxin activity
Primary reference	Crystal structure of trimestatin, a disintegrin containing a cell adhesion recognition motif RGD., Fujii Y, Okuda D, Fujimoto Z, Horii K, Morita T, Mizuno H, J Mol Biol 2003 Oct 3;332(5):1115-22. PMID:14499613

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (18 Kb) [Save to disk] Biological Unit Coordinates (1j2l.pdb1.gz) 14 Kb LPC: Ligand-Protein Contacts for 1J2L CSU: Contacts of Structural Units for 1J2L Likely Quarternary Molecular Structure file(s) for 1J2L Structure Factors (76 Kb) Retrieve 1J2L in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1J2L from S2C, [Save to disk] Re-refined 1j2l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1J2L in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1J2L

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1J2L, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1j2la_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1j2l] [1j2l_A] SWISS-PROT database: [P21859] Domain organization of [DIST_TRIFL] by SWISSPFAM Domain found in 1J2L: [DISIN ] by SMART

Other resources with information on 1J2L

Community annotation for 1J2L at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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