1J30 Electron Transport date Jan 16, 2003
title The Crystal Structure Of Sulerythrin, A Rubrerythrin-Like Pr A Strictly Aerobic And Thermoacidiphilic Archaeon
authors S.Fushinobu, H.Shoun, T.Wakagi
compound source
Molecule: 144aa Long Hypothetical Rubrerythrin
Chain: A, B
Synonym: Sulerythrin, 144aa Long Rubrerythrin-Like Protein
 Organism_scientific: Sulfolobus Tokodaii
Organism_taxid: 273063
Strain: 7
symmetry Space Group: P 63
R_factor 0.192 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.428 72.428 98.208 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.70 Å
ligand FE, OXY, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of sulerythrin, a rubrerythrin-like protein from a strictly aerobic archaeon, Sulfolobus tokodaii strain 7, shows unexpected domain swapping., Fushinobu S, Shoun H, Wakagi T, Biochemistry 2003 Oct 14;42(40):11707-15. PMID:14529281
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (1j30.pdb1.gz) 51 Kb
  • Biological Unit Coordinates (1j30.pdb2.gz) 150 Kb
  • LPC: Ligand-Protein Contacts for 1J30
  • CSU: Contacts of Structural Units for 1J30
  • Likely Quarternary Molecular Structure file(s) for 1J30
  • Structure Factors (232 Kb)
  • Retrieve 1J30 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J30 from S2C, [Save to disk]
  • Re-refined 1j30 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1J30 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1J30
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J30, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j30a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1j30b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j30_A] [1j30] [1j30_B]
  • SWISS-PROT database: [Q96XZ7]
  • Domain organization of [Q96XZ7_SULTO] by SWISSPFAM
    • Other resources with information on 1J30
  • Community annotation for 1J30 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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