1J35	Protein Binding Blood Clotting	date	Jan 20, 2003
title	Crystal Structure Of Ca(II)-Bound Gla Domain Of Factor Ix Co With Binding Protein
authors	Y.Shikamoto, T.Morita, Z.Fujimoto, H.Mizuno
compound		source
Molecule: Coagulation Factor Ix-Binding Protein A Chain Chain: A Synonym: Coagulation Factor Ix Binding Protein Chain A		Organism_scientific: Trimeresurus Flavoviridis Organism_taxid: 88087 Secretion: Venom
Molecule: Coagulation Factor Ix-Binding Protein B Chain Chain: B		Organism_scientific: Trimeresurus Flavoviridis Organism_taxid: 88087 Secretion: Venom
Molecule: Coagulation Factor Ix Chain: C Fragment: Gla Domain Ec: 3.4.21.22		Organism_scientific: Bos Taurus Organism_common: Cattle Organism_taxid: 9913 Secretion: Plasma
symmetry	Space Group: C 1 2 1	R_factor 0.227 R_Free 0.270
crystal cell	length a length b length c angle alpha angle beta angle gamma 127.959 39.074 63.949 90.00 99.56 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	CA, CGU	enzyme	Hydrolase E.C.3.4.21.22 BRENDA
related structures	by homologous chain: 1FVU, 1IOD, 1J34
Gene Ontology	Chain Function Process Component A, B toxin activity C
Primary reference	Crystal structure of Mg2+- and Ca2+-bound Gla domain of factor IX complexed with binding protein., Shikamoto Y, Morita T, Fujimoto Z, Mizuno H, J Biol Chem 2003 Jun 27;278(26):24090-4. PMID:12695512

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk] Biological Unit Coordinates (1j35.pdb1.gz) 56 Kb LPC: Ligand-Protein Contacts for 1J35 CSU: Contacts of Structural Units for 1J35 Likely Quarternary Molecular Structure file(s) for 1J35 Structure Factors (265 Kb) Retrieve 1J35 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1J35 from S2C, [Save to disk] Re-refined 1j35 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1J35 in 3D

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Visual 3D analysis of 1J35

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1J35, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1j35a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1j35b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1j35c_, region C [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1j35_B] [1j35_A] [1j35] [1j35_C] SWISS-PROT database: [P00741] [Q7LZ71] [P23807] Domain organization of [FA9_BOVIN] [IXA_TRIFL] [IXXB_TRIFL] by SWISSPFAM Domains found in 1J35: [CLECT] [GLA ] by SMART

Other resources with information on 1J35

Community annotation for 1J35 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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