1J3F	Oxygen Storage Transport	date	Jan 24, 2003
title	Crystal Structure Of An Artificial Metalloprotein:Cr(III)(3, Salophen)Apo-A71g Myoglobin
authors	T.Koshiyama, M.Kono, M.Ohashi, T.Ueno, A.Suzuki, T.Yamane, Y.Watan
compound		source
Molecule: Myoglobin Chain: A Engineered: Yes Mutation: Yes		Organism_scientific: Physeter Catodon Organism_common: Sperm Whale Organism_taxid: 9755 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Tb-1
symmetry	Space Group: P 21 21 21	R_factor 0.194 R_Free 0.219
crystal cell	length a length b length c angle alpha angle beta angle gamma 32.972 58.787 76.237 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.45 Å
ligand	CR, CZM, PO4	enzyme
related structures	by homologous chain: 1BVD, 1DWS
Gene Ontology	Chain Function Process Component A
Primary reference	Coordinated Design of Cofactor and Active Site Structures in Development of New Protein Catalysts., Ueno T, Koshiyama T, Ohashi M, Kondo K, Kono M, Suzuki A, Yamane T, Watanabe Y, J Am Chem Soc 2005 May 11;127(18):6556-6562. PMID:15869276

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk] Biological Unit Coordinates (1j3f.pdb1.gz) 31 Kb LPC: Ligand-Protein Contacts for 1J3F CSU: Contacts of Structural Units for 1J3F Likely Quarternary Molecular Structure file(s) for 1J3F Structure Factors (418 Kb) Retrieve 1J3F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1J3F from S2C, [Save to disk] Re-refined 1j3f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1J3F in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1J3F

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1J3F, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1j3fa_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1j3f_A] [1j3f] SWISS-PROT database: [P02185] Domain organization of [MYG_PHYCA] by SWISSPFAM

Other resources with information on 1J3F

Community annotation for 1J3F at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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