1J4X Hydrolase date Dec 13, 2001
title Human Vh1-Related Dual-Specificity Phosphatase C124s Mutant- Complex
authors M.A.Schumacher, J.L.Todd, K.G.Tanner, J.M.Denu
compound source
Molecule: Dual Specificity Protein Phosphatase 3
Chain: A
Ec: 3.1.3.48
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7-7-Vhr

Molecule: Dde(Ahp)(Tpo)G(Ptr)Vatr
Chain: D
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.188 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.390 55.770 101.130 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.75 Å
ligand AHP, PTR, TPO enzyme Hydrolase E.C.3.1.3.48 BRENDA
note 1J4X supersedes 1F5D
related structures by homologous chain: 1VHR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for the recognition of a bisphosphorylated MAP kinase peptide by human VHR protein Phosphatase., Schumacher MA, Todd JL, Rice AE, Tanner KG, Denu JM, Biochemistry. 2002 Mar 5;41(9):3009-17. PMID:11863439
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (1j4x.pdb1.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 1J4X
  • CSU: Contacts of Structural Units for 1J4X
  • Likely Quarternary Molecular Structure file(s) for 1J4X
  • Retrieve 1J4X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J4X from S2C, [Save to disk]
  • View 1J4X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J4X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J4X, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j4xa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j4x] [1j4x_D] [1j4x_A]
  • SWISS-PROT database: [P51452]
  • Domain organization of [DUS3_HUMAN] by SWISSPFAM
  • Domain found in 1J4X: [DSPc ] by SMART
  • Other resources with information on 1J4X
  • Community annotation for 1J4X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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