1J6U Crystal structure of UDP-N-acetylmuramate-alanine ligase MurC (TM0231) from Thermotoga maritima at 2.3 A resolution date
authors JCSG, Joint.Center.for.Structural.Genomics.
compound source
symmetry
R_factor
R_Free 0.279
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of an Udp-n-acetylmuramate-alanine ligase MurC (TM0231) from Thermotoga maritima at 2.3 A resolution., Spraggon G, Schwarzenbacher R, Kreusch A, Lee CC, Abdubek P, Ambing E, Biorac T, Brinen LS, Canaves JM, Cambell J, Chiu HJ, Dai X, Deacon AM, DiDonato M, Elsliger MA, Eshagi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kuhn P, Levin I, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Quijano K, Robb A, Stevens RC, van den Bedem H, Velasquez J, Vincent J, von Delft F, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Lesley SA, Wilson IA, Proteins 2004 Jun 1;55(4):1078-81. PMID:15146505
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (1j6u.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 1J6U
  • CSU: Contacts of Structural Units for 1J6U
  • Likely Quarternary Molecular Structure file(s) for 1J6U
  • Structure Factors (484 Kb)
  • Retrieve 1J6U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J6U from S2C, [Save to disk]
  • Re-refined 1j6u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1J6U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1J6U
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J6U, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j6ua1, region A:0-88 [Jmol] [rasmolscript] [script source]
        - Domain d1j6ua2, region A:296-446 [Jmol] [rasmolscript] [script source]
        - Domain d1j6ua3, region A:89-295 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j6u_A] [1j6u]
  • SWISS-PROT database: [Q9WY73]
  • Domain organization of [MURC_THEMA] by SWISSPFAM
    • Other resources with information on 1J6U
  • Community annotation for 1J6U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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