1J6X Signaling Protein date May 14, 2001
title Crystal Structure Of Helicobacter Pylori Luxs
authors H.A.Lewis, E.B.Furlong, M.G.Bergseid, W.E.Sanderson, S.G.Buchana
compound source
Molecule: Autoinducer-2 Production Protein Luxs
Chain: A, B
Synonym: Ai-2 Synthesis Protein, Conserved Hypothetical Pro Jhp0097;
Engineered: Yes
Organism_scientific: Helicobacter Pylori
Organism_taxid: 210
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.219 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.140 71.140 130.140 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.38 Å
ligand MET, MSE, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA structural genomics approach to the study of quorum sensing: crystal structures of three LuxS orthologs., Lewis HA, Furlong EB, Laubert B, Eroshkina GA, Batiyenko Y, Adams JM, Bergseid MG, Marsh CD, Peat TS, Sanderson WE, Sauder JM, Buchanan SG, Structure (Camb) 2001 Jun;9(6):527-37. PMID:11435117
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (1j6x.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 1J6X
  • CSU: Contacts of Structural Units for 1J6X
  • Likely Quarternary Molecular Structure file(s) for 1J6X
  • Structure Factors (272 Kb)
  • Retrieve 1J6X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J6X from S2C, [Save to disk]
  • Re-refined 1j6x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1J6X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J6X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J6X, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j6xa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1j6xb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j6x] [1j6x_A] [1j6x_B]
  • SWISS-PROT database: [Q9ZMW8]
  • Domain organization of [LUXS_HELPJ] by SWISSPFAM
  • Other resources with information on 1J6X
  • Community annotation for 1J6X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science