1J7H Unknown Function date May 16, 2001
title Solution Structure Of Hi0719, A Hypothetical Protein From Ha Influenzae
authors L.Parsons, N.Bonander, E.Eisenstein, M.Gilson, V.Kairys, J.Orban, Function Project (S2f)
compound source
Molecule: Hypothetical Protein Hi0719
Chain: A, B, C
Engineered: Yes
 Organism_scientific: Haemophilus Influenzae
Organism_taxid: 727
Gene: Yjgf
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
methodSolution NMR
related structures by homologous chain: 1QU9
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceSolution structure and functional ligand screening of HI0719, a highly conserved protein from bacteria to humans in the YjgF/YER057c/UK114 family., Parsons L, Bonander N, Eisenstein E, Gilson M, Kairys V, Orban J, Biochemistry 2003 Jan 14;42(1):80-9. PMID:12515541
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1997 Kb) [Save to disk]
  • Biological Unit Coordinates (1j7h.pdb1.gz) 98 Kb
  • CSU: Contacts of Structural Units for 1J7H
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1J7H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J7H from S2C, [Save to disk]
    • View 1J7H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1J7H
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J7H, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j7ha_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1j7hb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1j7hc_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j7h_B] [1j7h_A] [1j7h] [1j7h_C]
  • SWISS-PROT database: [P44839]
  • Domain organization of [Y719_HAEIN] by SWISSPFAM
    • Other resources with information on 1J7H
  • Community annotation for 1J7H at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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