1J89 Immune System date May 20, 2001
title Human High Affinity Fc Receptor Fc(Epsilon)Ri(Alpha), Tetrag Crystal Form 2
authors S.C.Garman, S.Sechi, J.P.Kinet, T.S.Jardetzky
compound source
Molecule: High Affinity Immunoglobulin Epsilon Receptor Alp Subunit;
Chain: A, B, C, D, E
Fragment: Extracellular Fragment
Synonym: Fc(Epsilon)Ri(Alpha); Ige Fc Receptor, Alpha-Subun Epsilon Ri-Alpha;
Engineered: Yes
Other_details: Glycosylated Protein, Chain A By Sugars F, B G, C By Sugars H, D By Sugars I, E By Sugars J
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell_line: Ldld.Lec1
Expression_system_organ: Ovary
symmetry Space Group: P 43
R_factor 0.273 R_Free 0.291
crystal
cell
length a length b length c angle alpha angle beta angle gamma
150.500 150.500 74.180 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.10 Å
ligand BMA, NAG enzyme
Primary referenceThe analysis of the human high affinity IgE receptor Fc epsilon Ri alpha from multiple crystal forms., Garman SC, Sechi S, Kinet JP, Jardetzky TS, J Mol Biol 2001 Aug 31;311(5):1049-62. PMID:11531339
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk]
  • Biological Unit Coordinates (1j89.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (1j89.pdb2.gz) 31 Kb
  • Biological Unit Coordinates (1j89.pdb3.gz) 31 Kb
  • Biological Unit Coordinates (1j89.pdb4.gz) 31 Kb
  • Biological Unit Coordinates (1j89.pdb5.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 1J89
  • CSU: Contacts of Structural Units for 1J89
  • Likely Quarternary Molecular Structure file(s) for 1J89
  • Retrieve 1J89 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J89 from S2C, [Save to disk]
    • View 1J89 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1J89
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J89, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j89a1, region A:4-85 [Jmol] [rasmolscript] [script source]
        - Domain d1j89a2, region A:86-171 [Jmol] [rasmolscript] [script source]
        - Domain d1j89b1, region B:4-85 [Jmol] [rasmolscript] [script source]
        - Domain d1j89b2, region B:86-171 [Jmol] [rasmolscript] [script source]
        - Domain d1j89c1, region C:4-85 [Jmol] [rasmolscript] [script source]
        - Domain d1j89c2, region C:86-171 [Jmol] [rasmolscript] [script source]
        - Domain d1j89d1, region D:4-85 [Jmol] [rasmolscript] [script source]
        - Domain d1j89d2, region D:86-171 [Jmol] [rasmolscript] [script source]
        - Domain d1j89e1, region E:4-85 [Jmol] [rasmolscript] [script source]
        - Domain d1j89e2, region E:86-171 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j89_B] [1j89_D] [1j89_A] [1j89_E] [1j89_C] [1j89]
  • SWISS-PROT database: [P12319]
  • Domain organization of [FCERA_HUMAN] by SWISSPFAM
  • Domains found in 1J89: [IG_like] [IGc2 ] by SMART
    • Other resources with information on 1J89
  • Community annotation for 1J89 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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