1J9H Crystal Structure of an RNA Duplex with Uridine Bulges date
authors Xiong, Y., Deng, J., Sudarsanakumar, C., Sundaralingam, M.
compound source
symmetry
R_factor
R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.40
ligand CA, CBR enzyme
Primary referenceCrystal structure of an RNA duplex r(gugucgcac)(2) with uridine bulges., Xiong Y, Deng J, Sudarsanakumar C, Sundaralingam M, J Mol Biol 2001 Oct 26;313(3):573-82. PMID:11676540
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (1j9h.pdb1.gz) 10 Kb
  • Biological Unit Coordinates (1j9h.pdb2.gz) 10 Kb
  • LPC: Ligand-Protein Contacts for 1J9H
  • CSU: Contacts of Structural Units for 1J9H
  • Likely Quarternary Molecular Structure file(s) for 1J9H
  • Retrieve 1J9H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J9H from S2C, [Save to disk]
  • View 1J9H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J9H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J9H, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j9h_B] [1j9h_A] [1j9h_C] [1j9h] [1j9h_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1J9H
  • Community annotation for 1J9H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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