1JAL Structural Genomics, Unknown Function date May 30, 2001
title Ychf Protein (Hi0393)
authors A.Teplyakov, G.L.Gilliland, Structure 2 Function Project (S2f)
compound source
Molecule: Ychf Protein
Chain: A, B
Synonym: Hi0393, Probable Gtp-Binding Protein Hi0393
Engineered: Yes
 Organism_scientific: Haemophilus Influenzae
Organism_taxid: 727
Gene: Ychf
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.204 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.000 93.600 85.200 90.00 100.10 90.00
method X-Ray Diffractionresolution 2.40 Å
related structures by homologous chain: 1RFL, 1XZP, 1XZQ
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of the YchF protein reveals binding sites for GTP and nucleic acid., Teplyakov A, Obmolova G, Chu SY, Toedt J, Eisenstein E, Howard AJ, Gilliland GL, J Bacteriol 2003 Jul;185(14):4031-7. PMID:12837776
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (120 Kb) [Save to disk]
  • Biological Unit Coordinates (1jal.pdb1.gz) 61 Kb
  • Biological Unit Coordinates (1jal.pdb2.gz) 57 Kb
  • CSU: Contacts of Structural Units for 1JAL
  • Likely Quarternary Molecular Structure file(s) for 1JAL
  • Structure Factors (335 Kb)
  • Retrieve 1JAL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JAL from S2C, [Save to disk]
  • Re-refined 1jal structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1JAL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JAL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JAL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jala1, region A:1-278 [Jmol] [rasmolscript] [script source]
        - Domain d1jala2, region A:279-363 [Jmol] [rasmolscript] [script source]
        - Domain d1jalb1, region B:1-278 [Jmol] [rasmolscript] [script source]
        - Domain d1jalb2, region B:279-363 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jal] [1jal_A] [1jal_B]
  • SWISS-PROT database: [P44681]
  • Domain organization of [ENGD_HAEIN] by SWISSPFAM
    • Other resources with information on 1JAL
  • Community annotation for 1JAL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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