1JAO	Hydrolase Hydrolase Inhibitor	date	Mar 11, 1996
title	Complex Of 3-Mercapto-2-Benzylpropanoyl-Ala-Gly-Nh2 With The Domain Of Matrix Metallo Proteinase-8 (Met80 Form)
authors	F.Grams, P.Reinemer, J.C.Powers, T.Kleine, M.Piper, H.Tschesche, R W.Bode
compound		source
Molecule: Matrix Metallo Proteinase-8 (Met80 Form) Chain: A Fragment: Catalytic Domain, Residues 80 - 242 Synonym: Mmp-8-Met80 Form Ec: 3.4.24.34 Engineered: Yes Other_details: Mmp-8 Is Identical To The Human Neutrophil C		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell: Neutrophils Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.183 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 33.240 69.200 72.330 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	0D3, CA, ZN	enzyme	Hydrolase E.C.3.4.24.34 BRENDA
related structures	by homologous chain: 1CGL, 1YOU, 456C
Gene Ontology	Chain Function Process Component A
Primary reference	X-ray structures of human neutrophil collagenase complexed with peptide hydroxamate and peptide thiol inhibitors. Implications for substrate binding and rational drug design., Grams F, Reinemer P, Powers JC, Kleine T, Pieper M, Tschesche H, Huber R, Bode W, Eur J Biochem 1995 Mar 15;228(3):830-41. PMID:7737183

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk] Biological Unit Coordinates (1jao.pdb1.gz) 36 Kb LPC: Ligand-Protein Contacts for 1JAO CSU: Contacts of Structural Units for 1JAO Likely Quarternary Molecular Structure file(s) for 1JAO Retrieve 1JAO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JAO from S2C, [Save to disk]

View 1JAO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JAO

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JAO, from MSDmotif at EBI Genome occurence of 1JAO's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jaoa_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jao] [1jao_B] [1jao_A] SWISS-PROT database: [P22894] Domain organization of [MMP8_HUMAN] by SWISSPFAM Domain found in 1JAO: [ZnMc ] by SMART

Other resources with information on 1JAO

Community annotation for 1JAO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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