1JAS Ligase date May 31, 2001
title Hsubc2b
authors T.Miura, W.Klaus, A.Ross, P.Guentert, H.Senn
compound source
Molecule: Ubiquitin-Conjugating Enzyme E2-17 Kda
Chain: A
Ec: 6.3.2.19
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
ligand
enzyme Ligase E.C.6.3.2.19 BRENDA
related structures by homologous chain: 1Q34
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe NMR structure of the class I human ubiquitin-conjugating enzyme 2b., Miura T, Klaus W, Ross A, Guntert P, Senn H, J Biomol NMR 2002 Jan;22(1):89-92. PMID:11885984
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (798 Kb) [Save to disk]
  • Biological Unit Coordinates (1jas.pdb1.gz) 39 Kb
  • CSU: Contacts of Structural Units for 1JAS
  • Original NMR restraints for 1JAS from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1JAS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JAS from S2C, [Save to disk]
  • View 1JAS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JAS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JAS, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jasa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jas_A] [1jas]
  • SWISS-PROT database: [P63146]
  • Domain organization of [UBE2B_HUMAN] by SWISSPFAM
  • Domain found in 1JAS: [UBCc ] by SMART
  • Other resources with information on 1JAS
  • Community annotation for 1JAS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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