1JC5	Isomerase	date	Jun 07, 2001
title	Crystal Structure Of Native Methylmalonyl-Coa Epimerase
authors	A.A.Mc Carthy, H.M.Baker, S.C.Shewry, M.L.Patchett, E.N.Baker
compound		source
Molecule: Methylmalonyl-Coa Epimerase Chain: A, B, C, D, E, F Ec: 5.1.99.1 Engineered: Yes		Organism_scientific: Propionibacterium Freudenreichii Subsp Shermanii; Organism_taxid: 1752 Strain: Subsp. Shermanii Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pteex
symmetry	Space Group: P 21 21 21	R_factor 0.248 R_Free 0.293
crystal cell	length a length b length c angle alpha angle beta angle gamma 55.985 114.020 156.418 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	SO4	enzyme	Isomerase E.C.5.1.99.1 BRENDA
related structures	by homologous chain: 1JC4
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Crystal structure of methylmalonyl-coenzyme A epimerase from P. shermanii: a novel enzymatic function on an ancient metal binding scaffold., McCarthy AA, Baker HM, Shewry SC, Patchett ML, Baker EN, Structure (Camb) 2001 Jul 3;9(7):637-46. PMID:11470438

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk] Biological Unit Coordinates (1jc5.pdb1.gz) 49 Kb Biological Unit Coordinates (1jc5.pdb2.gz) 49 Kb Biological Unit Coordinates (1jc5.pdb3.gz) 48 Kb LPC: Ligand-Protein Contacts for 1JC5 CSU: Contacts of Structural Units for 1JC5 Likely Quarternary Molecular Structure file(s) for 1JC5 Structure Factors (471 Kb) Retrieve 1JC5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JC5 from S2C, [Save to disk] Re-refined 1jc5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1JC5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JC5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JC5, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jc5a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1jc5b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1jc5c_, region C [Jmol] [rasmolscript] [script source]     - Domain d1jc5d_, region D [Jmol] [rasmolscript] [script source]     - Domain d1jc5e_, region E [Jmol] [rasmolscript] [script source]     - Domain d1jc5f_, region F [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jc5_D] [1jc5_F] [1jc5_E] [1jc5_B] [1jc5_C] [1jc5] [1jc5_A] SWISS-PROT database: [Q8VQN0] Domain organization of [Q8VQN0_PROFR] by SWISSPFAM

Other resources with information on 1JC5

Community annotation for 1JC5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---