1JDB	Ligase	date	Mar 25, 1997
title	Carbamoyl Phosphate Synthetase From Escherichia Coli
authors	J.B.Thoden, H.M.Holden, G.Wesenberg, F.M.Raushel, I.Rayment
compound		source
Molecule: Carbamoyl Phosphate Synthetase Chain: B, E, H, K Ec: 6.3.5.5		Organism_scientific: Escherichia Coli Organism_taxid: 562
Molecule: Carbamoyl Phosphate Synthetase Chain: C, F, I, L Ec: 6.3.5.5		Organism_scientific: Escherichia Coli Organism_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.179 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 143.800 167.700 323.000 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	ADP, CL, GLN, K, MN, NET, ORN, PO4	enzyme	Ligase E.C.6.3.5.5 BRENDA
related structures	by homologous chain: 1C30, 1T36
Gene Ontology	Chain Function Process Component F, C, I, L K, E, B, H
Primary reference	The structure of carbamoyl phosphate synthetase determined to 2.1 A resolution., Thoden JB, Raushel FM, Benning MM, Rayment I, Holden HM, Acta Crystallogr D Biol Crystallogr. 1999 Jan;55(Pt 1):8-24. Epub 1999 Jan, 1. PMID:10089390

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1002 Kb) [Save to disk] Biological Unit Coordinates (1jdb.pdb1.gz) 987 Kb Biological Unit Coordinates (1jdb.pdb2.gz) 260 Kb Biological Unit Coordinates (1jdb.pdb3.gz) 259 Kb Biological Unit Coordinates (1jdb.pdb4.gz) 260 Kb Biological Unit Coordinates (1jdb.pdb5.gz) 260 Kb LPC: Ligand-Protein Contacts for 1JDB CSU: Contacts of Structural Units for 1JDB Likely Quarternary Molecular Structure file(s) for 1JDB Retrieve 1JDB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JDB from S2C, [Save to disk]

View 1JDB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JDB

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JDB, from MSDmotif at EBI Genome occurence of 1JDB's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jdbb3, region B:0-127 [Jmol] [rasmolscript] [script source]     - Domain d1jdbb5, region B:128-402 [Jmol] [rasmolscript] [script source]     - Domain d1jdbb1, region B:403-555 [Jmol] [rasmolscript] [script source]     - Domain d1jdbb4, region B:556-676 [Jmol] [rasmolscript] [script source]     - Domain d1jdbb6, region B:677-935 [Jmol] [rasmolscript] [script source]     - Domain d1jdbb2, region B:936-1072 [Jmol] [rasmolscript] [script source]     - Domain d1jdbc2, region C:153-380 [Jmol] [rasmolscript] [script source]     - Domain d1jdbc1, region C:2-152 [Jmol] [rasmolscript] [script source]     - Domain d1jdbe3, region E:1-127 [Jmol] [rasmolscript] [script source]     - Domain d1jdbe5, region E:128-402 [Jmol] [rasmolscript] [script source]     - Domain d1jdbe1, region E:403-555 [Jmol] [rasmolscript] [script source]     - Domain d1jdbe4, region E:556-676 [Jmol] [rasmolscript] [script source]     - Domain d1jdbe6, region E:677-935 [Jmol] [rasmolscript] [script source]     - Domain d1jdbe2, region E:936-1072 [Jmol] [rasmolscript] [script source]     - Domain d1jdbf2, region F:153-381 [Jmol] [rasmolscript] [script source]     - Domain d1jdbf1, region F:2-152 [Jmol] [rasmolscript] [script source]     - Domain d1jdbh3, region H:0-127 [Jmol] [rasmolscript] [script source]     - Domain d1jdbh5, region H:128-402 [Jmol] [rasmolscript] [script source]     - Domain d1jdbh1, region H:403-555 [Jmol] [rasmolscript] [script source]     - Domain d1jdbh4, region H:556-676 [Jmol] [rasmolscript] [script source]     - Domain d1jdbh6, region H:677-935 [Jmol] [rasmolscript] [script source]     - Domain d1jdbh2, region H:936-1072 [Jmol] [rasmolscript] [script source]     - Domain d1jdbi2, region I:153-380 [Jmol] [rasmolscript] [script source]     - Domain d1jdbi1, region I:2-152 [Jmol] [rasmolscript] [script source]     - Domain d1jdbk3, region K:0-127 [Jmol] [rasmolscript] [script source]     - Domain d1jdbk5, region K:128-402 [Jmol] [rasmolscript] [script source]     - Domain d1jdbk1, region K:403-555 [Jmol] [rasmolscript] [script source]     - Domain d1jdbk4, region K:556-676 [Jmol] [rasmolscript] [script source]     - Domain d1jdbk6, region K:677-935 [Jmol] [rasmolscript] [script source]     - Domain d1jdbk2, region K:936-1072 [Jmol] [rasmolscript] [script source]     - Domain d1jdbl2, region L:153-380 [Jmol] [rasmolscript] [script source]     - Domain d1jdbl1, region L:2-152 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jdb_H] [1jdb_I] [1jdb_L] [1jdb_C] [1jdb_E] [1jdb_B] [1jdb_F] [1jdb_K] [1jdb] SWISS-PROT database: [P0A6F1] [P00968] Domain organization of [CARA_ECOLI] [CARB_ECOLI] by SWISSPFAM Domains found in 1JDB: [CPSase_L_D3] [CPSase_sm_chain] [MGS ] by SMART

Other resources with information on 1JDB

Community annotation for 1JDB at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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