1JDM Membrane Protein date Jun 14, 2001
title Nmr Structure Of Sarcolipin
authors G.Veglia, A.Mascioni
compound source
Molecule: Sarcolipin
Chain: A
Engineered: Yes
Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Homo Sapie (Humans).
methodSolution NMR
note 1JDM is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and orientation of sarcolipin in lipid environments., Mascioni A, Karim C, Barany G, Thomas DD, Veglia G, Biochemistry 2002 Jan 15;41(2):475-82. PMID:11781085
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (1jdm.pdb1.gz) 9 Kb
  • CSU: Contacts of Structural Units for 1JDM
  • Retrieve 1JDM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JDM from S2C, [Save to disk]
  • View 1JDM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JDM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JDM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jdma_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jdm] [1jdm_A]
  • SWISS-PROT database: [O00631]
  • Belongs to the phospholamban (ca(2+)-channel and ca(2+)-atpase regulator) (plb) family according to TCDB.
  • Domain organization of [SARCO_HUMAN] by SWISSPFAM
  • Other resources with information on 1JDM
  • Community annotation for 1JDM at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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