1JDT Transferase date Jun 15, 2001
title Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine Phospho Complexed With Mta And Sulfate Ion
authors T.C.Appleby, I.I.Mathews, M.Porcelli, G.Cacciapuoti, S.E.Ealick
compound source
Molecule: 5'-Methylthioadenosine Phosphorylase
Chain: A, B, C
Synonym: Mta Phosphorylase; Mtap
Ec: 2.4.2.28
Engineered: Yes
Organism_scientific: Sulfolobus Solfataricus
Organism_taxid: 2287
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.222 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.600 176.300 87.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand MTA, SO4 enzyme Transferase E.C.2.4.2.28 BRENDA
related structures by homologous chain: 1JDV, 1JDZ
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceThree-dimensional structure of a hyperthermophilic 5'-deoxy-5'-methylthioadenosine phosphorylase from Sulfolobus solfataricus., Appleby TC, Mathews II, Porcelli M, Cacciapuoti G, Ealick SE, J Biol Chem 2001 Oct 19;276(42):39232-42. PMID:11489901
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (1jdt.pdb1.gz) 221 Kb
  • LPC: Ligand-Protein Contacts for 1JDT
  • CSU: Contacts of Structural Units for 1JDT
  • Likely Quarternary Molecular Structure file(s) for 1JDT
  • Retrieve 1JDT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JDT from S2C, [Save to disk]
  • View 1JDT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JDT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JDT, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jdta_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jdtb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1jdtc_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jdt] [1jdt_A] [1jdt_B] [1jdt_C]
  • SWISS-PROT database: [P50389]
  • Domain organization of [MTAP_SULSO] by SWISSPFAM
  • Other resources with information on 1JDT
  • Community annotation for 1JDT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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