1JEF	Hydrolase	date	Apr 23, 1997
title	Turkey Lysozyme Complex With (Glcnac)3
authors	K.Harata, M.Muraki
compound		source
Molecule: Lysozyme Chain: A Ec: 3.2.1.17		Organism_scientific: Meleagris Gallopavo Organism_common: Turkey Organism_taxid: 9103 Cell: Egg
symmetry	Space Group: C 1 2 1	R_factor 0.182 R_Free 0.225
crystal cell	length a length b length c angle alpha angle beta angle gamma 87.490 32.940 49.000 90.00 119.10 90.00
method	X-Ray Diffraction	resolution	1.77 Å
ligand	NAG, SO4	enzyme	Hydrolase E.C.3.2.1.17 BRENDA
related structures	by homologous chain: 1GWD, 1N4F
Gene Ontology	Chain Function Process Component A
Primary reference	X-ray structure of turkey-egg lysozyme complex with tri-N-acetylchitotriose. Lack of binding ability at subsite A., Harata K, Muraki M, Acta Crystallogr D Biol Crystallogr. 1997 Nov 1;53(Pt 6):650-7. PMID:15299852

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk] Biological Unit Coordinates (1jef.pdb1.gz) 23 Kb LPC: Ligand-Protein Contacts for 1JEF CSU: Contacts of Structural Units for 1JEF Likely Quarternary Molecular Structure file(s) for 1JEF Structure Factors (93 Kb) Retrieve 1JEF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JEF from S2C, [Save to disk] Re-refined 1jef structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1JEF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JEF

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JEF, from MSDmotif at EBI Genome occurence of 1JEF's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jef__, region [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jef_A] [1jef] SWISS-PROT database: [P00703] Domain organization of [LYSC_MELGA] by SWISSPFAM Domain found in 1JEF: [LYZ1 ] by SMART

Other resources with information on 1JEF

Community annotation for 1JEF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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