1JF7 Hydrolase date Jun 20, 2001
title Human Ptp1b Catalytic Domain Complexed With Pnu177836
authors S.D.Larsen, T.Barf, C.Liljebris, P.D.May, D.Ogg, T.J.O'Sullivan, B.J.Palazuk, H.J.Schostarez, F.C.Stevens, J.E.Bleasdale
compound source
Molecule: Protein-Tyrosine Phosphatase 1b
Chain: A, B
Fragment: Catalytic Domain
Synonym: Ptp-1b
Ec: 3.1.3.48
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.203 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.595 88.266 65.786 90.00 107.38 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand TBH BindingDB enzyme Hydrolase E.C.3.1.3.48 BRENDA
related structures by homologous chain: 1G7G, 1Q6M
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSynthesis and biological activity of a novel class of small molecular weight peptidomimetic competitive inhibitors of protein tyrosine phosphatase 1B., Larsen SD, Barf T, Liljebris C, May PD, Ogg D, O'Sullivan TJ, Palazuk BJ, Schostarez HJ, Stevens FC, Bleasdale JE, J Med Chem 2002 Jan 31;45(3):598-622. PMID:11806712
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk]
  • Biological Unit Coordinates (1jf7.pdb1.gz) 51 Kb
  • Biological Unit Coordinates (1jf7.pdb2.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 1JF7
  • CSU: Contacts of Structural Units for 1JF7
  • Likely Quarternary Molecular Structure file(s) for 1JF7
  • Structure Factors (281 Kb)
  • Retrieve 1JF7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JF7 from S2C, [Save to disk]
  • Re-refined 1jf7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JF7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JF7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JF7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jf7a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jf7b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jf7_B] [1jf7_A] [1jf7]
  • SWISS-PROT database: [P18031]
  • Domain organization of [PTN1_HUMAN] by SWISSPFAM
  • Domains found in 1JF7: [PTPc] [PTPc_DSPc ] by SMART
  • Other resources with information on 1JF7
  • Community annotation for 1JF7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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