1JFF Structural Protein date Jun 20, 2001
title Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sh Stabilized With Taxol
authors J.Lowe, H.Li, K.H.Downing, E.Nogales
compound source
Molecule: Tubulin Alpha Chain
Chain: A
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Brain

Molecule: Tubulin Beta Chain
Chain: B
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Brain
symmetry Space Group: P 1 21 1
R_factor 0.232 R_Free 0.297
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.200 93.500 90.000 90.00 90.00 90.00
method Electron Crystallographyresolution 3.50 Å
ligand GDP, GTP, MG, TA1, ZN enzyme
note 1JFF (Molecule of the Month:pdb175)
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceRefined structure of alpha beta-tubulin at 3.5 A resolution., Lowe J, Li H, Downing KH, Nogales E, J Mol Biol. 2001 Nov 9;313(5):1045-57. PMID:11700061
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk]
  • Biological Unit Coordinates (1jff.pdb1.gz) 134 Kb
  • LPC: Ligand-Protein Contacts for 1JFF
  • CSU: Contacts of Structural Units for 1JFF
  • Likely Quarternary Molecular Structure file(s) for 1JFF
  • Retrieve 1JFF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JFF from S2C, [Save to disk]
    • View 1JFF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JFF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JFF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jffa1, region A:2-245 [Jmol] [rasmolscript] [script source]
        - Domain d1jffa2, region A:246-439 [Jmol] [rasmolscript] [script source]
        - Domain d1jffb1, region B:2-245 [Jmol] [rasmolscript] [script source]
        - Domain d1jffb2, region B:246-437 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jff_B] [1jff_A] [1jff]
  • SWISS-PROT database: [Q2HJ86] [P02554]
  • Domain organization of [TBA1D_BOVIN] [TBB_PIG] by SWISSPFAM
  • Domains found in 1JFF: [Tubulin] [Tubulin_C ] by SMART
    • Other resources with information on 1JFF
  • Community annotation for 1JFF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1JFF from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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