1JGJ Signaling Protein date Jun 25, 2001
title Crystal Structure Of Sensory Rhodopsin II At 2.4 Angstroms: Into Color Tuning And Transducer Interaction
authors H.Luecke
compound source
Molecule: Sensory Rhodopsin II
Chain: A
Engineered: Yes
 Organism_scientific: Natronomonas Pharaonis
Organism_taxid: 2257
Expression_system: Natronomonas Pharaonis
Expression_system_taxid: 2257
symmetry Space Group: C 2 2 21
R_factor 0.233 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.340 130.810 50.870 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand BOG, RET enzyme
note 1JGJ (Molecule of the Month:pdb27)
related structures by homologous chain: 1GUE
Gene
Ontology
ChainFunctionProcessComponent
A
  • ion channel activity


    • Primary referenceCrystal structure of sensory rhodopsin II at 2.4 angstroms: insights into color tuning and transducer interaction., Luecke H, Schobert B, Lanyi JK, Spudich EN, Spudich JL, Science 2001 Aug 24;293(5534):1499-503. PMID:11452084
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (1jgj.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 1JGJ
  • CSU: Contacts of Structural Units for 1JGJ
  • Likely Quarternary Molecular Structure file(s) for 1JGJ
  • Retrieve 1JGJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JGJ from S2C, [Save to disk]
    • View 1JGJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JGJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JGJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jgja_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jgj] [1jgj_A]
  • SWISS-PROT database: [P42196]
  • Belongs to the ion-translocating microbial rhodopsin (mr) family according to TCDB.
  • Domain organization of [BACS2_NATPH] by SWISSPFAM
  • Domain found in 1JGJ: [Bac_rhodopsin ] by SMART
    • Other resources with information on 1JGJ
  • Community annotation for 1JGJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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