1JHJ Cell Cycle date Jun 28, 2001
title Crystal Structure Of The Apc10doc1 Subunit Of The Human Ana Promoting Complex
authors K.S.Wendt, H.C.Vodermaier, U.Jacob, C.Gieffers, M.Gmachl, J.M.Pe R.Huber, P.Sondermann
compound source
Molecule: Apc10
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)Pubs250
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11d
symmetry Space Group: P 6 2 2
R_factor 0.209 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.664 97.664 67.769 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.60 Å
ligand NI enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the APC10/DOC1 subunit of the human anaphase-promoting complex., Wendt KS, Vodermaier HC, Jacob U, Gieffers C, Gmachl M, Peters JM, Huber R, Sondermann P, Nat Struct Biol 2001 Sep;8(9):784-8. PMID:11524682
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (1jhj.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 1JHJ
  • CSU: Contacts of Structural Units for 1JHJ
  • Likely Quarternary Molecular Structure file(s) for 1JHJ
  • Structure Factors (180 Kb)
  • Retrieve 1JHJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JHJ from S2C, [Save to disk]
  • Re-refined 1jhj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JHJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JHJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JHJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jhja_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jhj_A] [1jhj]
  • SWISS-PROT database: [Q9UM13]
  • Domain organization of [APC10_HUMAN] by SWISSPFAM
  • Domain found in 1JHJ: [APC10 ] by SMART
  • Other resources with information on 1JHJ
  • Community annotation for 1JHJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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