1JHV	Transferase	date	Jun 28, 2001
title	Three-Dimensional Structure Of Cobt In Complex With P-Cresol Nicotinate
authors	C.G.Cheong, J.Escalante-Semerena, I.Rayment
compound		source
Molecule: Nicotinate Mononucleotide:5,6-Dimethylbenzimidazo Phosphoribosyltransferase; Chain: A Synonym: Nicotinate-Nucleotide--Dimethylbenzimidazole Phosphoribosyltransferase, Nn: Dbi Prt Ec: 2.4.2.21 Engineered: Yes		Organism_scientific: Salmonella Enterica Organism_taxid: 28901 Expression_system: Salmonella Enterica Expression_system_taxid: 28901
symmetry	Space Group: P 21 21 2	R_factor 0.181 R_Free 0.274
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.860 90.020 47.590 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	NIO, PCR, PO4	enzyme	Transferase E.C.2.4.2.21 BRENDA
related structures	by homologous chain: 1JHU, 1L4E
Gene Ontology	Chain Function Process Component A
Primary reference	Structural investigation of the biosynthesis of alternative lower ligands for cobamides by nicotinate mononucleotide: 5,6-dimethylbenzimidazole phosphoribosyltransferase from Salmonella enterica., Cheong CG, Escalante-Semerena JC, Rayment I, J Biol Chem 2001 Oct 5;276(40):37612-20. PMID:11441022

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk] Biological Unit Coordinates (1jhv.pdb1.gz) 102 Kb LPC: Ligand-Protein Contacts for 1JHV CSU: Contacts of Structural Units for 1JHV Likely Quarternary Molecular Structure file(s) for 1JHV Structure Factors (297 Kb) Retrieve 1JHV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JHV from S2C, [Save to disk] Re-refined 1jhv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1JHV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JHV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JHV, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jhva_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jhv] [1jhv_A] SWISS-PROT database: [Q05603] Domain organization of [COBT_SALTY] by SWISSPFAM

Other resources with information on 1JHV

Community annotation for 1JHV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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