1JI3 Hydrolase date Jun 29, 2001
title Crystal Structure Of The First Thermostable Bacterial Lipase Bacillus Stearothermophilus
authors J.D.A.Tyndall, S.Sinchaikul, L.A.Fothergill-Gilmore, P.Taylor, M.D.Walkinshaw
compound source
Molecule: Lipase
Chain: A, B
Ec: 3.1.1.3
Engineered: Yes
Organism_scientific: Geobacillus Stearothermophilus
Organism_taxid: 1422
Variant: P1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15[Prep4]
Expression_system_vector_type: Pet Plasmid
Expression_system_plasmid: Pqe-60
symmetry Space Group: C 1 2 1
R_factor 0.166 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.500 81.237 99.782 90.00 96.33 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CA, ZN enzyme Hydrolase E.C.3.1.1.3 BRENDA
related structures by homologous chain: 1KU0
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of a thermostable lipase from Bacillus stearothermophilus P1., Tyndall JD, Sinchaikul S, Fothergill-Gilmore LA, Taylor P, Walkinshaw MD, J Mol Biol 2002 Nov 8;323(5):859-69. PMID:12417199
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk]
  • Biological Unit Coordinates (1ji3.pdb1.gz) 129 Kb
  • LPC: Ligand-Protein Contacts for 1JI3
  • CSU: Contacts of Structural Units for 1JI3
  • Likely Quarternary Molecular Structure file(s) for 1JI3
  • Retrieve 1JI3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JI3 from S2C, [Save to disk]
  • View 1JI3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JI3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JI3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ji3a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ji3b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ji3_B] [1ji3] [1ji3_A]
  • SWISS-PROT database: [Q9L6D3]
  • Domain organization of [Q9L6D3_BACST] by SWISSPFAM
  • Other resources with information on 1JI3
  • Community annotation for 1JI3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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