1JIG Metal Transport date Jul 02, 2001
title Dlp-2 From Bacillus Anthracis
authors E.Papinutto, W.G.Dundon, N.Pitulis, R.Battistutta, C.Montecucco,
compound source
Molecule: Dlp-2
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Bacillus Anthracis
Organism_taxid: 1392
Gene: Dlp-2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl1-Blue
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psm214g
symmetry Space Group: H 3
R_factor 0.186 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.723 87.723 214.875 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.46 Å
ligand FE enzyme
related structures by homologous chain: 1JI5
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure of two iron-binding proteins from Bacillus anthracis., Papinutto E, Dundon WG, Pitulis N, Battistutta R, Montecucco C, Zanotti G, J Biol Chem 2002 Apr 26;277(17):15093-8. PMID:11836250
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (1jig.pdb1.gz) 286 Kb
  • LPC: Ligand-Protein Contacts for 1JIG
  • CSU: Contacts of Structural Units for 1JIG
  • Likely Quarternary Molecular Structure file(s) for 1JIG
  • Structure Factors (879 Kb)
  • Retrieve 1JIG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JIG from S2C, [Save to disk]
  • Re-refined 1jig structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1JIG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JIG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1JIG 1JIGA 1JIGB 1JIGC 1JIGD from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JIG, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jiga_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jigb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1jigc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1jigd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jig_B] [1jig_A] [1jig_C] [1jig] [1jig_D]
  • SWISS-PROT database: [Q8RPQ1]
  • Domain organization of [DPS1_BACAN] by SWISSPFAM
    • Other resources with information on 1JIG
  • Community annotation for 1JIG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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