1JJ3 Hydrolase date Jul 03, 2001
title Crystal Structure Of Monoclinic Lysozyme Grown At Ph 4.6
authors S.Datta, B.K.Biswal, M.Vijayan
compound source
Molecule: Lysozyme
Chain: A, B
Synonym: 1,4-Beta-N-Acetylmuramidase C; Allergen Gal D 4; G
Ec: 3.2.1.17
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Tissue: Egg White
Cellular_location: Cytoplasm
symmetry Space Group: P 1 21 1
R_factor 0.176 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
27.415 62.803 60.935 90.00 92.72 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand
enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe effect of stabilizing additives on the structure and hydration of proteins: a study involving tetragonal lysozyme., Datta S, Biswal BK, Vijayan M, Acta Crystallogr D Biol Crystallogr 2001 Nov;57(Pt 11):1614-20. PMID:11679726
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (1jj3.pdb1.gz) 23 Kb
  • Biological Unit Coordinates (1jj3.pdb2.gz) 24 Kb
  • CSU: Contacts of Structural Units for 1JJ3
  • Likely Quarternary Molecular Structure file(s) for 1JJ3
  • Structure Factors (155 Kb)
  • Retrieve 1JJ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JJ3 from S2C, [Save to disk]
  • Re-refined 1jj3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JJ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JJ3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JJ3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jj3a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jj3b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jj3_B] [1jj3_A] [1jj3]
  • SWISS-PROT database: [P00698]
  • Domain organization of [LYSC_CHICK] by SWISSPFAM
  • Domain found in 1JJ3: [LYZ1 ] by SMART
  • Other resources with information on 1JJ3
  • Community annotation for 1JJ3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1JJ3 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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