1JJ9 Hydrolase date Jul 04, 2001
title Crystal Structure Of Mmp8-Barbiturate Complex Reveals Mechan Collagen Substrate Recognition
authors H.Brandstetter, F.Grams, D.Glitz, A.Lang, R.Huber, W.Bode, H.W.Kr R.A.Engh
compound source
Molecule: Matrix Metalloproteinase 8
Chain: A
Fragment: Catalytic Domain
Synonym: Neutrophil Collagenase
Ec: 3.4.24.34
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: I 2 2 2
R_factor 0.211 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.020 69.230 88.470 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand BBT, CA, ZN enzyme Hydrolase E.C.3.4.24.34 BRENDA
related structures by homologous chain: 1CXV, 1MNC
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe 1.8-A crystal structure of a matrix metalloproteinase 8-barbiturate inhibitor complex reveals a previously unobserved mechanism for collagenase substrate recognition., Brandstetter H, Grams F, Glitz D, Lang A, Huber R, Bode W, Krell HW, Engh RA, J Biol Chem 2001 May 18;276(20):17405-12. PMID:11278347
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (1jj9.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 1JJ9
  • CSU: Contacts of Structural Units for 1JJ9
  • Likely Quarternary Molecular Structure file(s) for 1JJ9
  • Structure Factors (141 Kb)
  • Retrieve 1JJ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JJ9 from S2C, [Save to disk]
  • Re-refined 1jj9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JJ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JJ9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JJ9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jj9a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jj9] [1jj9_A]
  • SWISS-PROT database: [P22894]
  • Domain organization of [MMP8_HUMAN] by SWISSPFAM
  • Domain found in 1JJ9: [ZnMc ] by SMART
  • Other resources with information on 1JJ9
  • Community annotation for 1JJ9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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