1JNJ Immune System date Jul 24, 2001
title Nmr Solution Structure Of The Human Beta2-Microglobulin
authors G.Verdone, A.Corazza, P.Viglino, F.Pettirossi, S.Giorgetti, P.Man A.Andreola, M.Stoppini, V.Bellotti, G.Esposito
compound source
Molecule: Beta2-Microglobulin
Chain: A
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phn1
methodSolution NMR
related structures by homologous chain: 1HHH
Gene
Ontology
ChainFunctionProcessComponent
A
  • cellular response to iron io...

    • Primary referenceThe solution structure of human beta2-microglobulin reveals the prodromes of its amyloid transition., Verdone G, Corazza A, Viglino P, Pettirossi F, Giorgetti S, Mangione P, Andreola A, Stoppini M, Bellotti V, Esposito G, Protein Sci 2002 Mar;11(3):487-99. PMID:11847272
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (554 Kb) [Save to disk]
  • Biological Unit Coordinates (1jnj.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 1JNJ
  • Original NMR restraints for 1JNJ from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1JNJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JNJ from S2C, [Save to disk]
    • View 1JNJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JNJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JNJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jnja_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jnj] [1jnj_A]
  • SWISS-PROT database: [P61769]
  • Domain organization of [B2MG_HUMAN] by SWISSPFAM
  • Domain found in 1JNJ: [IGc1 ] by SMART
    • Other resources with information on 1JNJ
  • Community annotation for 1JNJ at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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