1JNP	Immune System	date	Jul 24, 2001
title	Crystal Structure Of Murine Tcl1 At 2.5 Resolution
authors	J.M.Petock, I.Y.Torshin, Y.F.Wang, G.C.Dubois, C.M.Croce, R.W.Har I.T.Weber
compound		source
Molecule: T-Cell Leukemialymphoma Protein 1a Chain: A, B Synonym: P14 Tcl1 Protein, Tcl1 Oncogene, Tcl-1 Protein Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 89.323 115.911 37.945 90.00 115.15 90.00
method	X-Ray Diffraction	resolution	2.50 Å
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of murine Tcl1 at 2.5 A resolution and implications for the TCL oncogene family., Petock JM, Torshin IY, Wang YF, Du Bois GC, Croce CM, Harrison RW, Weber IT, Acta Crystallogr D Biol Crystallogr 2001 Nov;57(Pt 11):1545-51. PMID:11679718

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk] Biological Unit Coordinates (1jnp.pdb1.gz) 36 Kb CSU: Contacts of Structural Units for 1JNP Likely Quarternary Molecular Structure file(s) for 1JNP Structure Factors (195 Kb) Retrieve 1JNP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JNP from S2C, [Save to disk] Re-refined 1jnp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1JNP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JNP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JNP, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jnpa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1jnpb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jnp_A] [1jnp_B] [1jnp] SWISS-PROT database: [P56280] Domain organization of [TCL1A_MOUSE] by SWISSPFAM

Other resources with information on 1JNP

Community annotation for 1JNP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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