1JPU	Oxidoreductase	date	Aug 03, 2001
title	Crystal Structure Of Bacillus Stearothermophilus Glycerol Dehydrogenase
authors	S.N.Ruzheinikov, J.Burke, S.Sedelnikova, P.J.Baker, R.Taylor, P.A.Bullough, N.M.Muir, M.G.Gore, D.W.Rice
compound		source
Molecule: Glycerol Dehydrogenase Chain: A Ec: 1.1.1.6 Engineered: Yes Mutation: Yes		Organism_scientific: Geobacillus Stearothermophilus Organism_taxid: 1422 Gene: Glda Or Gld Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm103 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pkk233-2
symmetry	Space Group: I 4 2 2	R_factor 0.163 R_Free 0.208
crystal cell	length a length b length c angle alpha angle beta angle gamma 105.030 105.030 148.200 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	ZN	enzyme	Oxidoreductase E.C.1.1.1.6 BRENDA
related structures	by homologous chain: 1JQ5, 1JQA
Gene Ontology	Chain Function Process Component A
Primary reference	Glycerol dehydrogenase. structure, specificity, and mechanism of a family III polyol dehydrogenase., Ruzheinikov SN, Burke J, Sedelnikova S, Baker PJ, Taylor R, Bullough PA, Muir NM, Gore MG, Rice DW, Structure (Camb) 2001 Sep;9(9):789-802. PMID:11566129

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk] Biological Unit Coordinates (1jpu.pdb1.gz) 474 Kb Biological Unit Coordinates (1jpu.pdb2.gz) 120 Kb LPC: Ligand-Protein Contacts for 1JPU CSU: Contacts of Structural Units for 1JPU Likely Quarternary Molecular Structure file(s) for 1JPU Retrieve 1JPU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JPU from S2C, [Save to disk]

View 1JPU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JPU

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JPU, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jpua_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jpu] [1jpu_A] SWISS-PROT database: [P32816] Domain organization of [GLDA_BACST] by SWISSPFAM

Other resources with information on 1JPU

Community annotation for 1JPU at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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