1JQI Oxidoreductase date Aug 07, 2001
title Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase With Acetoacetyl-Coa
authors K.P.Battaile, J.Molin-Case, R.Paschke, M.Wang, D.Bennett, J.Vockl J.P.Kim
compound source
Molecule: Short Chain Acyl-Coa Dehydrogenase
Chain: A, B
Ec: 1.3.99.2
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl1-Blue
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk-223-3
symmetry Space Group: P 3 2 1
R_factor 0.168 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
143.610 143.610 77.460 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.25 Å
ligand CAA, FAD enzyme Oxidoreductase E.C.1.3.99.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of rat short chain acyl-CoA dehydrogenase complexed with acetoacetyl-CoA: comparison with other acyl-CoA dehydrogenases., Battaile KP, Molin-Case J, Paschke R, Wang M, Bennett D, Vockley J, Kim JJ, J Biol Chem 2002 Apr 5;277(14):12200-7. PMID:11812788
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (1jqi.pdb1.gz) 249 Kb
  • LPC: Ligand-Protein Contacts for 1JQI
  • CSU: Contacts of Structural Units for 1JQI
  • Likely Quarternary Molecular Structure file(s) for 1JQI
  • Structure Factors (284 Kb)
  • Retrieve 1JQI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JQI from S2C, [Save to disk]
  • Re-refined 1jqi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JQI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JQI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JQI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jqia1, region A:235-387 [Jmol] [rasmolscript] [script source]
        - Domain d1jqia2, region A:4-234 [Jmol] [rasmolscript] [script source]
        - Domain d1jqib2, region B:404-634 [Jmol] [rasmolscript] [script source]
        - Domain d1jqib1, region B:635-787 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jqi] [1jqi_B] [1jqi_A]
  • SWISS-PROT database: [P15651]
  • Domain organization of [ACADS_RAT] by SWISSPFAM
  • Other resources with information on 1JQI
  • Community annotation for 1JQI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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