1JQO Lyase date Aug 07, 2001
title Crystal Structure Of C4-Form Phosphoenolpyruvate Carboxylase Maize
authors H.Matsumura, Y.Kai
compound source
Molecule: Phosphoenolpyruvate Carboxylase
Chain: A, B
Synonym: Phosphoenolpyruvate Carboxylase 1, Pepcase
Ec: 4.1.1.31
Organism_scientific: Zea Mays
Organism_taxid: 4577
Strain: B37
Tissue: Leaves
symmetry Space Group: C 2 2 21
R_factor 0.236 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
158.440 174.610 254.280 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand SO4 enzyme Lyase E.C.4.1.1.31 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures of C4 form maize and quaternary complex of E. coli phosphoenolpyruvate carboxylases., Matsumura H, Xie Y, Shirakata S, Inoue T, Yoshinaga T, Ueno Y, Izui K, Kai Y, Structure (Camb) 2002 Dec;10(12):1721-30. PMID:12467579
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (291 Kb) [Save to disk]
  • Biological Unit Coordinates (1jqo.pdb1.gz) 568 Kb
  • Biological Unit Coordinates (1jqo.pdb2.gz) 285 Kb
  • LPC: Ligand-Protein Contacts for 1JQO
  • CSU: Contacts of Structural Units for 1JQO
  • Likely Quarternary Molecular Structure file(s) for 1JQO
  • Structure Factors (537 Kb)
  • Retrieve 1JQO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JQO from S2C, [Save to disk]
  • Re-refined 1jqo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JQO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JQO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JQO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jqoa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jqob_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jqo_A] [1jqo] [1jqo_B]
  • SWISS-PROT database: [P04711]
  • Domain organization of [CAPP1_MAIZE] by SWISSPFAM
  • Other resources with information on 1JQO
  • Community annotation for 1JQO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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