1JRP	Oxidoreductase	date	Aug 14, 2001
title	Crystal Structure Of Xanthine Dehydrogenase Inhibited By All From Rhodobacter Capsulatus
authors	J.J.Truglio, K.Theis, S.Leimkuhler, R.Rappa, K.V.Rajagopalan, C.K
compound		source
Molecule: Xanthine Dehydrogenase, Chain A Chain: A, C, E, G Fragment: Chain A, Residues 1-462 Synonym: Xd Ec: 1.1.1.204 Engineered: Yes		Organism_scientific: Rhodobacter Capsulatus Organism_taxid: 1061 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Xanthine Dehydrogenase, Chain B Chain: B, D, F, H Fragment: Chain B, Residues 1-777 Synonym: Xd Ec: 1.1.1.204 Engineered: Yes		Organism_scientific: Rhodobacter Capsulatus Organism_taxid: 1061 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1	R_factor 0.193 R_Free 0.243
crystal cell	length a length b length c angle alpha angle beta angle gamma 92.617 140.728 157.665 109.59 105.84 101.25
method	X-Ray Diffraction	resolution	3.00 Å
ligand	141, CA, FAD, FES, MOS, MTE	enzyme	Oxidoreductase E.C.1.1.1.204 BRENDA
note	1JRP (Molecule of the Month:pdb117)
related structures	by homologous chain: 1JRO
Gene Ontology	Chain Function Process Component A, E, C, G electron transfer activity F, B, H, D
Primary reference	Crystal structures of the active and alloxanthine-inhibited forms of xanthine dehydrogenase from Rhodobacter capsulatus., Truglio JJ, Theis K, Leimkuhler S, Rappa R, Rajagopalan KV, Kisker C, Structure (Camb) 2002 Jan;10(1):115-25. PMID:11796116

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (733 Kb) [Save to disk] Biological Unit Coordinates (1jrp.pdb1.gz) 366 Kb Biological Unit Coordinates (1jrp.pdb2.gz) 368 Kb LPC: Ligand-Protein Contacts for 1JRP CSU: Contacts of Structural Units for 1JRP Likely Quarternary Molecular Structure file(s) for 1JRP Retrieve 1JRP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JRP from S2C, [Save to disk]

View 1JRP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JRP

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JRP, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jrpa2, region A:1-84 [Jmol] [rasmolscript] [script source]     - Domain d1jrpa4, region A:179-345 [Jmol] [rasmolscript] [script source]     - Domain d1jrpa3, region A:346-462 [Jmol] [rasmolscript] [script source]     - Domain d1jrpa1, region A:85-166 [Jmol] [rasmolscript] [script source]     - Domain d1jrpb2, region B:124-777 [Jmol] [rasmolscript] [script source]     - Domain d1jrpb1, region B:2-123 [Jmol] [rasmolscript] [script source]     - Domain d1jrpc2, region C:1-84 [Jmol] [rasmolscript] [script source]     - Domain d1jrpc4, region C:179-345 [Jmol] [rasmolscript] [script source]     - Domain d1jrpc3, region C:346-462 [Jmol] [rasmolscript] [script source]     - Domain d1jrpc1, region C:85-166 [Jmol] [rasmolscript] [script source]     - Domain d1jrpd2, region D:124-777 [Jmol] [rasmolscript] [script source]     - Domain d1jrpd1, region D:2-123 [Jmol] [rasmolscript] [script source]     - Domain d1jrpe2, region E:1-84 [Jmol] [rasmolscript] [script source]     - Domain d1jrpe4, region E:179-345 [Jmol] [rasmolscript] [script source]     - Domain d1jrpe3, region E:346-462 [Jmol] [rasmolscript] [script source]     - Domain d1jrpe1, region E:85-166 [Jmol] [rasmolscript] [script source]     - Domain d1jrpf2, region F:124-777 [Jmol] [rasmolscript] [script source]     - Domain d1jrpf1, region F:2-123 [Jmol] [rasmolscript] [script source]     - Domain d1jrpg2, region G:1-84 [Jmol] [rasmolscript] [script source]     - Domain d1jrpg4, region G:179-345 [Jmol] [rasmolscript] [script source]     - Domain d1jrpg3, region G:346-462 [Jmol] [rasmolscript] [script source]     - Domain d1jrpg1, region G:85-166 [Jmol] [rasmolscript] [script source]     - Domain d1jrph2, region H:124-777 [Jmol] [rasmolscript] [script source]     - Domain d1jrph1, region H:2-123 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jrp_G] [1jrp_C] [1jrp_A] [1jrp_H] [1jrp_B] [1jrp_E] [1jrp_D] [1jrp] [1jrp_F] SWISS-PROT database: [O54050] [O54051] Domain organization of [O54050_RHOCA] [O54051_RHOCA] by SWISSPFAM Domains found in 1JRP: [Ald_Xan_dh_C] [CO_deh_flav_C ] by SMART

Other resources with information on 1JRP

Community annotation for 1JRP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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