1JSL Hydrolase date Aug 17, 2001
title Crystal Structure Of Erwinia Chrysanthemi L-Asparaginase Com With 6-Hydroxy-D-Norleucine
authors K.Aghaiypour, A.Wlodawer, J.Lubkowski
compound source
Molecule: L-Asparaginase
Chain: A, B, C, D
Ec: 3.5.1.1
Organism_scientific: Erwinia Chrysanthemi
Organism_taxid: 556
symmetry Space Group: C 1 2 1
R_factor 0.186 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
106.150 90.386 127.370 90.00 91.38 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand 1PE, DDO, GOL enzyme Hydrolase E.C.3.5.1.1 BRENDA
related structures by homologous chain: 1HFW, 1JSR
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceDo bacterial L-asparaginases utilize a catalytic triad Thr-Tyr-Glu?, Aghaiypour K, Wlodawer A, Lubkowski J, Biochim Biophys Acta 2001 Dec 17;1550(2):117-28. PMID:11755201
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (224 Kb) [Save to disk]
  • Biological Unit Coordinates (1jsl.pdb1.gz) 219 Kb
  • LPC: Ligand-Protein Contacts for 1JSL
  • CSU: Contacts of Structural Units for 1JSL
  • Likely Quarternary Molecular Structure file(s) for 1JSL
  • Structure Factors (1820 Kb)
  • Retrieve 1JSL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JSL from S2C, [Save to disk]
  • Re-refined 1jsl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JSL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JSL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JSL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jsla_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jslb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1jslc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1jsld_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jsl_B] [1jsl_D] [1jsl_A] [1jsl_C] [1jsl]
  • SWISS-PROT database: [P06608]
  • Domain organization of [ASPG_ERWCH] by SWISSPFAM
  • Domain found in 1JSL: [Asparaginase ] by SMART
  • Other resources with information on 1JSL
  • Community annotation for 1JSL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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