1JSX Unknown Function date Aug 19, 2001
title Crystal Structure Of The Escherichia Coli Glucose-Inhibited Protein B (Gidb)
authors M.J.Romanowski, J.B.Bonanno, S.K.Burley, New York Sgx Research For Structural Genomics (Nysgxrc)
compound source
Molecule: Glucose-Inhibited Division Protein B
Chain: A
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Gidb
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p1
symmetry Space Group: P 41 2 2
R_factor 0.240 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.914 53.914 150.592 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the Escherichia coli glucose-inhibited division protein B (GidB) reveals a methyltransferase fold., Romanowski MJ, Bonanno JB, Burley SK, Proteins 2002 Jun 1;47(4):563-7. PMID:12001236
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (1jsx.pdb1.gz) 33 Kb
  • CSU: Contacts of Structural Units for 1JSX
  • Likely Quarternary Molecular Structure file(s) for 1JSX
  • Structure Factors (137 Kb)
  • Retrieve 1JSX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JSX from S2C, [Save to disk]
  • Re-refined 1jsx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JSX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JSX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JSX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jsxa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jsx] [1jsx_A]
  • SWISS-PROT database: [P0A6U5]
  • Domain organization of [RSMG_ECOLI] by SWISSPFAM
  • Other resources with information on 1JSX
  • Community annotation for 1JSX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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