1JSZ Transferase date Aug 19, 2001
title Crystal Structure Analysis Of N7,9-Dimethylguanine-Vp39 Comp
authors G.Hu, A.Oguro, P.D.Gershon, F.A.Quiocho
compound source
Molecule: Vp39
Chain: A
Fragment: Residues 1-307
Synonym: Poly(A) Polymerase Regulatory Subunit
Ec: 2.7.7.19
Engineered: Yes
Organism_scientific: Vaccinia Virus
Organism_taxid: 10245
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.210 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.300 67.700 79.600 90.00 118.10 90.00
method X-Ray Diffractionresolution 1.93 Å
ligand NDM, SAH enzyme Transferase E.C.2.7.7.19 BRENDA
related structures by homologous chain: 1VP3, 1VP9
Gene
Ontology
ChainFunctionProcessComponent
A
  • mRNA (nucleoside-2'-O-)-meth...


  • Primary referenceThe "cap-binding slot" of an mRNA cap-binding protein: quantitative effects of aromatic side chain choice in the double-stacking sandwich with cap., Hu G, Oguro A, Li C, Gershon PD, Quiocho FA, Biochemistry 2002 Jun 18;41(24):7677-87. PMID:12056899
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (1jsz.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 1JSZ
  • CSU: Contacts of Structural Units for 1JSZ
  • Likely Quarternary Molecular Structure file(s) for 1JSZ
  • Structure Factors (150 Kb)
  • Retrieve 1JSZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JSZ from S2C, [Save to disk]
  • Re-refined 1jsz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JSZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JSZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JSZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jsza_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jsz] [1jsz_A]
  • SWISS-PROT database: [P07617]
  • Domain organization of [PAP2_VACCW] by SWISSPFAM
  • Other resources with information on 1JSZ
  • Community annotation for 1JSZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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