1JT0	Transcription Dna	date	Aug 20, 2001
title	Crystal Structure Of A Cooperative Qacr-Dna Complex
authors	M.A.Schumacher, M.C.Miller, S.Grkovic, M.H.Brown, R.A.Skurray, R.
compound		source
Molecule: Qaca Operator Chain: E, F Engineered: Yes		Synthetic: Yes
Molecule: Hypothetical Transcriptional Regulator In Qaca 5' Chain: A, B, C, D Synonym: Qacr Repressor, Orf 188 Engineered: Yes Mutation: Yes		Organism_scientific: Staphylococcus Aureus Organism_taxid: 1280 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dh5a Expression_system_vector_type: Plasmid Expression_system_plasmid: Psk5210
symmetry	Space Group: P 65	R_factor 0.222 R_Free 0.258
crystal cell	length a length b length c angle alpha angle beta angle gamma 174.700 174.700 151.950 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	SO4	enzyme
related structures	by homologous chain: 1QVT, 1RPW
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structural basis for cooperative DNA binding by two dimers of the multidrug-binding protein QacR., Schumacher MA, Miller MC, Grkovic S, Brown MH, Skurray RA, Brennan RG, EMBO J 2002 Mar 1;21(5):1210-8. PMID:11867549

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (154 Kb) [Save to disk] Biological Unit Coordinates (1jt0.pdb1.gz) 149 Kb LPC: Ligand-Protein Contacts for 1JT0 CSU: Contacts of Structural Units for 1JT0 Likely Quarternary Molecular Structure file(s) for 1JT0 Structure Factors (665 Kb) Retrieve 1JT0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JT0 from S2C, [Save to disk] Re-refined 1jt0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1JT0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JT0

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JT0, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jt0a1, region A:2-72 [Jmol] [rasmolscript] [script source]     - Domain d1jt0a2, region A:73-189 [Jmol] [rasmolscript] [script source]     - Domain d1jt0b1, region B:2-72 [Jmol] [rasmolscript] [script source]     - Domain d1jt0b2, region B:73-189 [Jmol] [rasmolscript] [script source]     - Domain d1jt0c1, region C:2-72 [Jmol] [rasmolscript] [script source]     - Domain d1jt0c2, region C:73-189 [Jmol] [rasmolscript] [script source]     - Domain d1jt0d1, region D:2-72 [Jmol] [rasmolscript] [script source]     - Domain d1jt0d2, region D:73-186 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jt0_A] [1jt0_E] [1jt0_D] [1jt0_F] [1jt0_B] [1jt0_C] [1jt0] SWISS-PROT database: [P0A0N4] Domain organization of [QACR_STAAU] by SWISSPFAM

Other resources with information on 1JT0

Community annotation for 1JT0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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