1JU2 Lyase date Aug 23, 2001
title Crystal Structure Of The Hydroxynitrile Lyase From Almond
authors I.Dreveny, K.Gruber, A.Glieder, A.Thompson, C.Kratky
compound source
Molecule: Hydroxynitrile Lyase
Chain: A, B
Ec: 4.1.2.10
 Organism_scientific: Prunus Dulcis
Organism_common: Almond
Organism_taxid: 3755
symmetry Space Group: P 1
R_factor 0.160 R_Free 0.186
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.176 67.494 79.796 79.57 77.78 67.19
method X-Ray Diffractionresolution 1.47 Å
ligand BMA, FAD, FUC, IPA, MAN, NAG, NDG enzyme Lyase E.C.4.1.2.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe hydroxynitrile lyase from almond: a lyase that looks like an oxidoreductase., Dreveny I, Gruber K, Glieder A, Thompson A, Kratky C, Structure (Camb) 2001 Sep;9(9):803-15. PMID:11566130
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (203 Kb) [Save to disk]
  • Biological Unit Coordinates (1ju2.pdb1.gz) 100 Kb
  • Biological Unit Coordinates (1ju2.pdb2.gz) 99 Kb
  • LPC: Ligand-Protein Contacts for 1JU2
  • CSU: Contacts of Structural Units for 1JU2
  • Likely Quarternary Molecular Structure file(s) for 1JU2
  • Retrieve 1JU2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JU2 from S2C, [Save to disk]
    • View 1JU2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JU2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1JU2 1JU2A 1JU2B from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JU2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ju2a1, region A:1-293,A:464-521 [Jmol] [rasmolscript] [script source]
        - Domain d1ju2a2, region A:294-463 [Jmol] [rasmolscript] [script source]
        - Domain d1ju2b1, region B:1-293,B:464-521 [Jmol] [rasmolscript] [script source]
        - Domain d1ju2b2, region B:294-463 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ju2_B] [1ju2] [1ju2_A]
  • SWISS-PROT database: [Q945K2]
  • Domain organization of [Q945K2_PRUDU] by SWISSPFAM
    • Other resources with information on 1JU2
  • Community annotation for 1JU2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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