1JUM Transcription date Aug 24, 2001
title Crystal Structure Of The Multidrug Binding Transcriptional R Qacr Bound To The Natural Drug Berberine
authors M.A.Schumacher, M.C.Miller, S.Grkovic, M.H.Brown, R.A.Skurray, R.
compound source
Molecule: Hypothetical Transcriptional Regulator In Qaca 5'
Chain: B, D, A, E
Synonym: Qacr Repressor, Orf 188
Engineered: Yes
Mutation: Yes
Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5a
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psk5210
symmetry Space Group: P 42 21 2
R_factor 0.236 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
174.300 174.300 96.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.98 Å
ligand BER, SO4 enzyme
related structures by homologous chain: 1JTY
Gene
Ontology
ChainFunctionProcessComponent
A, D, E, B


Primary referenceStructural mechanisms of QacR induction and multidrug recognition., Schumacher MA, Miller MC, Grkovic S, Brown MH, Skurray RA, Brennan RG, Science 2001 Dec 7;294(5549):2158-63. PMID:11739955
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (1jum.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (1jum.pdb2.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 1JUM
  • CSU: Contacts of Structural Units for 1JUM
  • Likely Quarternary Molecular Structure file(s) for 1JUM
  • Structure Factors (357 Kb)
  • Retrieve 1JUM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JUM from S2C, [Save to disk]
  • Re-refined 1jum structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JUM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JUM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JUM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1juma1, region A:2-72 [Jmol] [rasmolscript] [script source]
        - Domain d1juma2, region A:73-187 [Jmol] [rasmolscript] [script source]
        - Domain d1jumb1, region B:2-72 [Jmol] [rasmolscript] [script source]
        - Domain d1jumb2, region B:73-187 [Jmol] [rasmolscript] [script source]
        - Domain d1jumd1, region D:2-72 [Jmol] [rasmolscript] [script source]
        - Domain d1jumd2, region D:73-187 [Jmol] [rasmolscript] [script source]
        - Domain d1jume1, region E:2-72 [Jmol] [rasmolscript] [script source]
        - Domain d1jume2, region E:73-187 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jum] [1jum_D] [1jum_E] [1jum_B] [1jum_A]
  • SWISS-PROT database: [P0A0N4]
  • Domain organization of [QACR_STAAU] by SWISSPFAM
  • Other resources with information on 1JUM
  • Community annotation for 1JUM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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