1JV7 Ion Transport date Aug 28, 2001
title Bacteriorhodopsin O-Like Intermediate State Of The D85s Muta Angstrom Resolution
authors S.Rouhani, J.P.Cartailler, M.T.Facciotti, P.Walian, R.Needleman J.K.Lanyi, R.M.Glaeser, H.Luecke
compound source
Molecule: Bacteriorhodopsin
Chain: A
Synonym: Br
Engineered: Yes
Mutation: Yes
Organism_scientific: Halobacterium Salinarum
Organism_taxid: 2242
Gene: Bop
Expression_system: Halobacterium Salinarum
Expression_system_taxid: 2242
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnov-R
symmetry Space Group: C 2 2 21
R_factor 0.213 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.800 121.300 85.700 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.25 Å
ligand LI1, RET enzyme
related structures by homologous chain: 1CWQ, 1Q5I
Gene
Ontology
ChainFunctionProcessComponent
A
  • ion channel activity


  • Primary referenceCrystal structure of the D85S mutant of bacteriorhodopsin: model of an O-like photocycle intermediate., Rouhani S, Cartailler JP, Facciotti MT, Walian P, Needleman R, Lanyi JK, Glaeser RM, Luecke H, J Mol Biol 2001 Oct 26;313(3):615-28. PMID:11676543
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (1jv7.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 1JV7
  • CSU: Contacts of Structural Units for 1JV7
  • Likely Quarternary Molecular Structure file(s) for 1JV7
  • Retrieve 1JV7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JV7 from S2C, [Save to disk]
  • View 1JV7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JV7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JV7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jv7a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jv7] [1jv7_A]
  • SWISS-PROT database: [P02945]
  • Belongs to the ion-translocating microbial rhodopsin (mr) family according to TCDB.
  • Domain organization of [BACR_HALSA] by SWISSPFAM
  • Domain found in 1JV7: [Bac_rhodopsin ] by SMART
  • Other resources with information on 1JV7
  • Community annotation for 1JV7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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