1JVR Matrix Protein date Oct 03, 1996
title Structure Of The Htlv-II Matrix Protein, Nmr, 20 Structures
authors A.M.Christensen, M.A.Massiah, B.G.Turner, W.I.Sundquist, M.F.Sum
compound source
Molecule: Human T-Cell Leukemia Virus Type II Matrix Protei
Chain: A
Synonym: Htlv-II Ma, Ma
Engineered: Yes
 Organism_scientific: Human T-Lymphotropic Virus 2
Organism_taxid: 11909
Cell_line: Bl21
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_plasmid: Wisp92-18
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThree-dimensional structure of the HTLV-II matrix protein and comparative analysis of matrix proteins from the different classes of pathogenic human retroviruses., Christensen AM, Massiah MA, Turner BG, Sundquist WI, Summers MF, J Mol Biol 1996 Dec 20;264(5):1117-31. PMID:9000634
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (720 Kb) [Save to disk]
  • Biological Unit Coordinates (1jvr.pdb1.gz) 36 Kb
  • CSU: Contacts of Structural Units for 1JVR
  • Original NMR restraints for 1JVR from PDB
  • Retrieve 1JVR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JVR from S2C, [Save to disk]
    • View 1JVR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JVR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JVR, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jvr__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jvr_A] [1jvr]
  • SWISS-PROT database: [P03346] [P03363] [P03353]
  • Domain organization of [GAG_HTLV2] [POL_HTLV2] [PRO_HTLV2] by SWISSPFAM
    • Other resources with information on 1JVR
  • Community annotation for 1JVR at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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