1JVU Hydrolase date Aug 31, 2001
title Crystal Structure Of Ribonuclease A (Complexed Form)
authors L.Vitagliano, A.Merlino, A.Zagari, L.Mazzarella
compound source
Molecule: Ribonuclease A
Chain: A, B
Synonym: Rnase 1; Rnase A
Ec: 3.1.27.5
Other_details: Complexed With Cytidine-2'-Monophosphate
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Pancreas
symmetry Space Group: C 1 2 1
R_factor 0.190 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.080 33.430 73.220 90.00 90.90 90.00
method X-Ray Diffractionresolution 1.78 Å
ligand C2P BindingDB enzyme Hydrolase E.C.3.1.27.5 BRENDA
related structures by homologous chain: 1RBE, 8RSA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • ribonuclease A activity


    • Primary referenceReversible substrate-induced domain motions in ribonuclease A., Vitagliano L, Merlino A, Zagari A, Mazzarella L, Proteins 2002 Jan 1;46(1):97-104. PMID:11746706
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (1jvu.pdb1.gz) 21 Kb
  • Biological Unit Coordinates (1jvu.pdb2.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 1JVU
  • CSU: Contacts of Structural Units for 1JVU
  • Likely Quarternary Molecular Structure file(s) for 1JVU
  • Retrieve 1JVU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JVU from S2C, [Save to disk]
    • View 1JVU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JVU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JVU, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jvua_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jvub_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jvu_B] [1jvu_A] [1jvu]
  • SWISS-PROT database: [P61823]
  • Domain organization of [RNAS1_BOVIN] by SWISSPFAM
  • Domain found in 1JVU: [RNAse_Pc ] by SMART
    • Other resources with information on 1JVU
  • Community annotation for 1JVU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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