1JVW Isomerase date Aug 31, 2001
title Trypanosoma Cruzi Macrophage Infectivity Potentiator (Tcmip)
authors P.J.B.Pereira, M.C.Vega, E.Gonzalez-Rey, R.Fernandez-Carazo, S.M Ribeiro, F.X.Gomis-Rueth, A.Gonzalez, M.Coll
compound source
Molecule: Macrophage Infectivity Potentiator
Chain: A
Synonym: Tcmip, Peptidyl-Prolyl Cis-Trans Isomerase, Ppiase Rotamase;
Ec: 5.2.1.8
Engineered: Yes
 Organism_scientific: Trypanosoma Cruzi
Organism_taxid: 5693
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.034 34.587 50.412 90.00 91.57 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand
enzyme Isomerase E.C.5.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • peptidyl-prolyl cis-trans is...


    • Primary referenceTrypanosoma cruzi macrophage infectivity potentiator has a rotamase core and a highly exposed alpha-helix., Pereira PJ, Vega MC, Gonzalez-Rey E, Fernandez-Carazo R, Macedo-Ribeiro S, Gomis-Ruth FX, Gonzalez A, Coll M, EMBO Rep 2002 Jan;3(1):88-94. PMID:11751578
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (1jvw.pdb1.gz) 31 Kb
  • CSU: Contacts of Structural Units for 1JVW
  • Likely Quarternary Molecular Structure file(s) for 1JVW
  • Retrieve 1JVW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JVW from S2C, [Save to disk]
    • View 1JVW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JVW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JVW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jvwa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jvw] [1jvw_A]
  • SWISS-PROT database: [Q09734]
  • Domain organization of [MIP_TRYCR] by SWISSPFAM
    • Other resources with information on 1JVW
  • Community annotation for 1JVW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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