1JW9	Ligase	date	Sep 03, 2001
title	Structure Of The Native Moeb-Moad Protein Complex
authors	M.W.Lake, M.M.Wuebbens, K.V.Rajagopalan, H.Schindelin
compound		source
Molecule: Molybdopterin Biosynthesis Moeb Protein Chain: B Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Moeb Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
Molecule: Molybdopterin [Mpt] Converting Factor, Subunit 1 Chain: D Synonym: Molybdenum Cofactor Biosynthesis Protein D Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Moad Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: P 41 21 2	R_factor 0.175 R_Free 0.209
crystal cell	length a length b length c angle alpha angle beta angle gamma 77.832 77.832 102.139 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	SO4, ZN	enzyme
note	1JW9 is a representative structure
related structures	by homologous chain: 1FMA, 1JWB, 1NVI
Gene Ontology	Chain Function Process Component B D
Primary reference	Mechanism of ubiquitin activation revealed by the structure of a bacterial MoeB-MoaD complex., Lake MW, Wuebbens MM, Rajagopalan KV, Schindelin H, Nature 2001 Nov 15;414(6861):325-9. PMID:11713534

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk] Biological Unit Coordinates (1jw9.pdb1.gz) 103 Kb LPC: Ligand-Protein Contacts for 1JW9 CSU: Contacts of Structural Units for 1JW9 Likely Quarternary Molecular Structure file(s) for 1JW9 Structure Factors (273 Kb) Retrieve 1JW9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JW9 from S2C, [Save to disk] Re-refined 1jw9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1JW9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JW9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JW9, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jw9b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1jw9d_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jw9] [1jw9_D] [1jw9_B] SWISS-PROT database: [P30748] [P12282] Domain organization of [MOAD_ECOLI] [MOEB_ECOLI] by SWISSPFAM

Other resources with information on 1JW9

Community annotation for 1JW9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1JW9 from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

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