1JWA Ligase date Sep 03, 2001
title Structure Of The Atp-Bound Moeb-Moad Protein Complex
authors M.W.Lake, M.M.Wuebbens, K.V.Rajagopalan, H.Schindelin
compound source
Molecule: Molybdopterin Biosynthesis Moeb Protein
Chain: B
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Moeb
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b

Molecule: Molybdopterin [Mpt] Converting Factor, Subunit 1
Chain: D
Synonym: Molybdenum Cofactor Biosynthesis Protein D
Engineered: Yes

Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Moad
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 41 21 2
R_factor 0.203 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
78.723 78.723 103.184 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand ATP enzyme
related structures by homologous chain: 1JWB
Gene
Ontology
ChainFunctionProcessComponent
B


D


Primary referenceMechanism of ubiquitin activation revealed by the structure of a bacterial MoeB-MoaD complex., Lake MW, Wuebbens MM, Rajagopalan KV, Schindelin H, Nature 2001 Nov 15;414(6861):325-9. PMID:11713534
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (1jwa.pdb1.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 1JWA
  • CSU: Contacts of Structural Units for 1JWA
  • Likely Quarternary Molecular Structure file(s) for 1JWA
  • Structure Factors (54 Kb)
  • Retrieve 1JWA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JWA from S2C, [Save to disk]
  • Re-refined 1jwa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JWA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JWA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JWA, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jwab_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1jwad_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jwa_D] [1jwa_B] [1jwa]
  • SWISS-PROT database: [P30748] [P12282]
  • Domain organization of [MOAD_ECOLI] [MOEB_ECOLI] by SWISSPFAM
  • Other resources with information on 1JWA
  • Community annotation for 1JWA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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