1JWR Hydrolase date Sep 05, 2001
title Crystal Structure Of Human Lysozyme At 100 K
authors J.Higo, M.Nakasako
compound source
Molecule: Lysozyme
Chain: A
Synonym: 1,4-Beta-N-Acetylmuramidase C
Ec: 3.2.1.17
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.178 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.170 60.980 33.170 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand
enzyme Hydrolase E.C.3.2.1.17 BRENDA
related structures by homologous chain: 1IWW, 1IWX
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHydration structure of human lysozyme investigated by molecular dynamics simulation and cryogenic X-ray crystal structure analyses: on the correlation between crystal water sites, solvent density, and solvent dipole., Higo J, Nakasako M, J Comput Chem 2002 Nov 15;23(14):1323-36. PMID:12214315
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (1jwr.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 1JWR
  • Likely Quarternary Molecular Structure file(s) for 1JWR
  • Retrieve 1JWR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JWR from S2C, [Save to disk]
  • View 1JWR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JWR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1JWR from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JWR, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jwra_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jwr] [1jwr_A]
  • SWISS-PROT database: [P61626]
  • Domain organization of [LYSC_HUMAN] by SWISSPFAM
  • Domain found in 1JWR: [LYZ1 ] by SMART
  • Other resources with information on 1JWR
  • Community annotation for 1JWR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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