1JXY Plant Protein date Sep 10, 2001
title Crambin Mixed Sequence Form At 220 K. Proteinwater Substate
authors M.M.Teeter, A.Yamano, B.Stec, U.Mohanty
compound source
Molecule: Crambin
Chain: A
Organism_scientific: Crambe Hispanica Subsp. Abyssinica
Organism_taxid: 3721
Strain: Subsp. Abyssinica
symmetry Space Group: P 1 21 1
R_factor 0.145 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.880 18.560 22.410 90.00 90.67 90.00
method X-Ray Diffractionresolution 0.89 Å
ligand EOH enzyme
related structures by homologous chain: 1JXT, 1JXW
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceOn the nature of a glassy state of matter in a hydrated protein: Relation to protein function., Teeter MM, Yamano A, Stec B, Mohanty U, Proc Natl Acad Sci U S A 2001 Sep 25;98(20):11242-7. PMID:11572978
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (20 Kb) [Save to disk]
  • Biological Unit Coordinates (1jxy.pdb1.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 1JXY
  • CSU: Contacts of Structural Units for 1JXY
  • Likely Quarternary Molecular Structure file(s) for 1JXY
  • Structure Factors (205 Kb)
  • Retrieve 1JXY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JXY from S2C, [Save to disk]
  • View 1JXY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JXY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1JXY from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JXY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jxya_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jxy_A] [1jxy]
  • SWISS-PROT database: [P01542]
  • Domain organization of [CRAM_CRAAB] by SWISSPFAM
  • Other resources with information on 1JXY
  • Community annotation for 1JXY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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