1JYL Transferase date Sep 12, 2001
title Catalytic Mechanism Of Ctp:Phosphocholine Cytidylyltransfera Streptococcus Pneumoniae (Licc)
authors B.Y.Kwak, M.Yun, H.W.Park
compound source
Molecule: Ctp:Phosphocholine Cytidylyltransferase
Chain: A, B, C, D
Synonym: Licc Protein
Engineered: Yes
 Organism_scientific: Streptococcus Pneumoniae
Organism_taxid: 1313
Gene: Licc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.208 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.200 69.000 81.600 93.40 92.80 97.10
method X-Ray Diffractionresolution 2.40 Å
ligand CDC, MG enzyme
related structures by homologous chain: 1JYK
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure and mechanism of CTP:phosphocholine cytidylyltransferase (LicC) from Streptococcus pneumoniae., Kwak BY, Zhang YM, Yun M, Heath RJ, Rock CO, Jackowski S, Park HW, J Biol Chem 2002 Feb 8;277(6):4343-50. PMID:11706035
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk]
  • Biological Unit Coordinates (1jyl.pdb1.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 1JYL
  • CSU: Contacts of Structural Units for 1JYL
  • Likely Quarternary Molecular Structure file(s) for 1JYL
  • Retrieve 1JYL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JYL from S2C, [Save to disk]
    • View 1JYL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JYL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JYL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jyla_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jylb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1jylc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1jyld_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jyl_B] [1jyl] [1jyl_A] [1jyl_C] [1jyl_D]
  • SWISS-PROT database: [Q97QE9]
  • Domain organization of [Q97QE9_STRPN] by SWISSPFAM
    • Other resources with information on 1JYL
  • Community annotation for 1JYL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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